Spectroscopic Analysis and ADME prediction of Phytochemicals in Methanolic Leaves Extract of Avicennia marina

 

Sachin Vanpure*, Nishant Nandkhile, Rahul Bhondwe, Suresh Palve

Postgraduate Department of Chemistry, Tuljaram Chaturchand College, Baramati, Maharashtra, India, 413102.

*Corresponding Author E-mail: rsbchem2020@gmail.com

 

ABSTRACT:

Phytochemicals are biologically active compounds found in plants. Phytochemicals of medicinal plant can cure various diseases thus phytochemical screening of plants is necessary for the discovery and devlopment of therapeutic agents. In present study. The FTIR spectrum of crude extract confirmed the presence of  alkanes, carboxylic acid, alcohol, aromatics and esters. The HPLC analysis of methanolic extract shows 11 peaks at 254nm, it may be phenolic and alcoholic compounds. The plant extract was scanned by using UV-VIS spectrophotometer ranging from 200-700nm and characteristic peaks were detected with different absorption respectively. The ADME study particularly focuses on important properties like lipophilicity, water solubility, pharmacokinetic, drug likeness, medicinal chemistry and this study carried out by using insilico ADME tool called Swiss ADME.

 

KEYWORDS: Avicennia marina, FTIR, HPLC, UV-VIS, Swiss ADME, Mangroves plant.

 

 


INTRODUCTION:

Mangroves are woody, salt-tolerant, adapted species of trees lives in brakish water and harsh coastal conditions where other plant species are unable to grow. Mangrove forests make up one of the most productive and biologically diverse ecosystems on the planet. Globally there are around 39.3 million acres of mangroves forest in the coastlines of tropical oceans1. From long times ago constituents in mangroves have been used in folk medicines to treat several diseases2. The crude leaves extracts of mangrove species showed important antioxidant and antimicrobial activity3,4.

 

Avicennia marina, also known as white mangrove or grey mangrove, is a shrub or tree belonging to the Acanthaceae family.

 

 

They are commonly 10–14 m long and have light grey or whitish bark with stiff, brittle, thin flakes. Their leaves are thick, glossy, and bright green on the upper side and gray or silvery white with small hairs on the lower side. The information of the compounds obtained from mangrove is very rare but several important classes of compounds like alkaloids, flavonoids, benzofurans, benzoquinones, carotenoids, steroids, tannins, triterpenes, aminoacids, carbohydrates, organicacids, glycoside, anthocyanides, procyanides, alcohols, sugars and lipids are previously reported5,6.

 

Hence, the current study aims to investigate the phytochemical present in extracts of Avicennia marina leaves with the help of FTIR, HPLC, UV-VIS and the computer tool called Swiss ADME technique.

 

MATERIALS AND METHODS:

Collection of samples:

Samples of mangrove Avicennia marinawere collected from mangroves habitat in Revdanda near Alibaug, Raigad District. Samples were transported in polyethylene bags. The leaves were washed with tap water several times to remove sand and debris. Sample was dried at ambient temperature in darkness. The dried leaves grinded by using electric blender for laboratory analysis.

 

Plant Extraction:

The extraction of Avicennia marina leaves was carried out by soaking the material in methanol (1:10 w/v i.e., 5g of sample in 50ml methanol) at room temperature for 24 hours. The extract after soaking, is filtered. Again adding 50ml fresh methanol to residue and boil it in boiling water bath till half the solution remains. Filter it and combine this filtrate and initial filtrate and kept it for as it is for evaporation of methanol. Finally extract is obtained.

 

Fourier Transform Infrared Spectroscopy (FTIR):

The FTIR analysis is one of the most commonly used analytical technique used to identify the functional groups of any plant extracts. Molecules absorb specific frequencies that are characteristic of their structure as can be seen in the spectrum. Dried powder of methanolic extract of plant material was used for FTIR analysis. 10mg of dried extract powder was loaded in FTIR spectroscope (Shimadzu, IR Affinity- 15WL) with a scan range from 500 to 4000cm-17,8,9.

 

High Performance Liquid Chromatography (HPLC):

The HPLC analysis of methanolic extract was carried out with chromatographic system (Shimadzu-LC-20AR). The separation was completed on a C18 5μ (4.6mm*250.0) column at ambient temperature. The mobile phase involves methanol and the separation was completed by using isocratic mode, elution completed at a flow rate of 1mL/min. The sample was run for 20 minutes and detection was done at 254nm by PDA detector. All chromatographic data were recorded and processed using Lab Solution software10,11,12.

 

UV-Visible Spectroscopy:

The sample was prepared by dissolving 1.0g sample in 100ml methanol and filtered through Whatmann filter paper No. 41. The sample was transferred to a cuvette (1 cm pathway) and the extract was scanned in wavelength ranging from 200nm to 700nm using Shimadzu Corporation, Japan (UV-1800 240V) spectrophotometer13,14.

 

Swiss ADME:

Swiss ADME is a online tool of Swiss institute of bioinformatics was used to identify particular ADME behaviours of the compounds from Avicennia marina leaves.  In this tool, results are presented for each molecule in the form of tables, graphs and excel spreadsheet15.

 

Physiochemical properties:

Physicochemical properties consist of clean molecular and physicochemical characteristics like molecular formula, molecular weights, number of heavy atoms, number of atomic heavy atoms, fraction csp3, number of rotatable bond, number of H-bond acceptors, number of H-bond doners, molar refractivity, TSPA respectively16,17.

 

Lipophilicity:

Swiss ADME gives access to five freely available predictive models; i.e. XLOGP3, an atomistic method along with corrective factors and knowledge-based library18, WLOGP, accomplishment of a purely atomistic method based on the fragmental system of19; MLOGP, an archetype of topological method dependent on a linear relationship implemented with 13 molecular descriptors20,21; SILICOS-IT, an hybrid method dependent on 27 fragments and 7 topological descriptors; iLOGP, it is based on physics dependent on free energies of solvation in n-octanol and water calculated by the Generalized-Born and solvent accessible surface area (GB/SA) model. The consensus log Po/w is the average of the above five predicted values by the five proposed methods22.

 

Solubility:

In Swiss ADME, there are two topological methods considered for prediction of Water Solubility. The first one is an implementation of the ESOL (Solubility class: Log S Scale: Insoluble<-10 poorly<-6, moderately<-4 soluble<-2 very<0<highly)and the another one is executed from Ali et al.2012 (Solubility class: Log S Scale: Insoluble<-10 poorly<-6, moderately<-4 soluble<-2very<0<highly). Both differ from the seminal general solubility equation23,24. Swiss ADME third predictor for water solubility was developed by SILICOS-IT (Solubility class: Log S Scale: Insoluble<-10 poorly<-6, moderately<-4 soluble<-2 very<0<highly) where the linear coefficient is fixed by molecular weight (R2=0.75).

 

Pharmacokinetics:

In pharmacokinetics section, evaluate particular ADME behaviours of the molecule under investigation. The elliptical region called Eggan egg involves GI absorption and BBB. The information of compounds being substrate or non-substrate of the permeability glycoprotein is key to appraise active efflux through biological membranes, for instance from the gastrointestinal wall to the lumen25. In this prediction, five major inhibitor (CYP1A2, CYP2C19, CYP2C9, CYP2D6, CYP3A4) and Log Kp (skin pentration coefficient) are studied.

 

Drug likeness:

Earlier in the discovery process of Drug involves assessment of ADME. Swiss ADME online tool was used to predict ADME parameters and drug-likeness nature of phytochemicals26. Swiss ADME predicts drug-likeness of molecule based on five disparate filters (Lipinski, veber, egan, muegge and bioavailability score).

 

Medicinal chemistry:

The purpose of this section is to help medicinal chemists in their daily drug discovery endeavours. These section includes four parameters Pains, Brenk, Leadlikeness and Synthetic accessibility.

 

RESULT AND DISCUSSION:

FTIR, HPLC and UV-VIS analysis was performed for present studies. The result obtained summarised below.

The FTIR spectrum of methanol leaves extract of Avicennia marina indicates the presence of different functional group. The result shown in figure 1 and table (1). The peak near 3304 cm-1 is O-H stretch (alcohol). Also the peaks near 3059 cm-1, 2924 cm-1 and 1620 cm-1 are C-H stretch (aromatics), C-H stretch (alkanes) and N-H bend (primary amines) respectively.

 

Figure 1: FTIR spectrum of methanolic extract of Avicennia marinaleaves

 

Table 1: FTIR Spectrum Peak Value and Functional Group obtain from methanolic extract of Avicennia marina leaves

S. No.

Peak Value

Functional group

Phyto compound identified

1

3304.06

O-H stretch

Alcohol

2

3059.1

C-H stretch

Aromatics

3

2924.09

C-H stretch

Alkanes

4

2852.72

C-H stretch

Alkanes

5

1620.21

N-H bend

Primary amine

6

1492.9

C-C stretch (in-ring)

Aromatics

7

1257.59

C-N stretch

Aromatic amines

8

1220.94

C-N

Aliphatic amines

9

1159.22

C-O stretch

Carboxylic acid, esters, ethers

10

979.84

=C-H bend

Alkenes

 

 

The result obtained from HPLC were shown in the figure 2. In table (2) shown that the methanol extract of Avicennia marina leaves have more than one retention time. The HPLC analysis of Avicennia marina leaves gave 11 peaks with maximum height at 2.699 min of retention time.

 

Figure 2: HPLC chromatogram of Avicennia marina leaves extract

 

Table 2: HPLC peak table of Avicennia marinaleaves extract

Peak

Retention Time

Area

Height

1

1.978

1011

194

2

2.699

5672409

440745

3

3.282

83680

14928

4

3.377

113902

19864

5

3.870

3322

721

6

4.030

41132

5811

7

5.092

1203

186

8

5.297

1219

170

9

7.603

9587

641

10

8.057

5410

349

11

11.887

5903

286

Total

 

5938778

483895

 

The UV-Visible spectroscopy of extract Avicennia marina leaves was carried out at a range 200 to 700nm. The profile showed peaks at 663, 601, 320, 281, 634, 311, 261nm with absorbance 0.0024, 0.022, 0.358, 0.400, 0.019, 0.352, 0.365 respectively shown in Figure 3 and Table (3). The maximum absorbance is 0.400 at 281 nm.

 

Table 3: UV-Visible Spectrum Peak values of methanolic extract of Avicennia marina leaves

S. No

Wavelength (nm)

Absorbance

1

663

0.0024

2

601

0.022

3

320

0.358

4

281

0.400

5

634

0.019

6

311

0.352

7

261

0.365

 

The result on predictive data for Physicochemical properties, Lipophilicity, Water solubility, Pharmacokinetics, Drug likeness and Medicinal Chemistry Friendliness of established 10 Phytochemicals such as 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, 17-Octadecynoic acid, Phthalic acid, butyl tetradecyl ester, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester, 2-Methoxy-4-vinylphenol (Table 4-9).

 

In table 4, molecular formula and molecular weight are obtained. 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester (C11H20O3, 200g/mol), Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester (C13H22O3, 226g/mol), Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester (C16H30O4Si3, 370g/mol), 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one (C14H22O, 206g/mol), Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester (C16H26O2, 250g/mol), 17-Octadecynoic acid (C18H32O2, 280g/mol), Phthalic acid, butyl tetradecyl ester (C26H42O4, 418g/mol), Pentadecanoic acid,14-methyl-, methyl ester (C17H34O2, 270g/mol), 9-Octadecenoic acid (Z)-, methyl ester (C19H36O2, 296g/mol), 2-Methoxy-4-vinylphenol (C9H10O2, 150g/mol).


 

Table 4: General characteristics of phytochemicals of Avicennia marina leaves

S. No.

Small Molecule

Molecular formula

Canonical Smiles

Molecular weight

(in g/mol)

1

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

C11H20O3

C=CC(CCC(=O)OC(C)(C)C)(O)C

200

2

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

C13H22O3

CCCCCC1C(CCC1=O)CC(=O)OC

226

3

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

C16H30O4Si3

O=C(c1ccc(cc1O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C

370

4

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

C14H22O

CC1=CCCC(C1/C=C(/C(=O)C)\C)(C)C

206

5

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

C16H26O2

CC(=O)OCC1CC2=C(CC1C)CCCC2(C)C

250

6

17-Octadecynoic acid

C18H32O2

C#CCCCCCCCCCCCCCCCC(=O)O

280

7

Phthalic acid, butyl tetradecyl ester

C26H42O4

CCCCCCCCCCCCCCOC(=O)c1ccccc1C(=O)OCCCC

418

8

Pentadecanoic acid,14-methyl-, methyl ester

C17H34O2

COC(=O)CCCCCCCCCCCCC(C)C

270

9

9-Octadecenoic acid (Z)-, methyl ester

C19H36O2

CCCCCCCC/C=C\CCCCCCCC(=O)OC

296

10

2-Methoxy-4-vinylphenol

C9H10O2

COc1cc(C=C)ccc1O

150

 


In table 5, in case of Lipophilicity, five other parameters such as iLOGP, XLOP3, WLOGP, MLOGP and SILICOS-IT were also obtained. For iLOGP, Phthalic acid, butyl tetradecyl ester (4.87) showed higher value and 2-Methoxy-4-vinylphenol (2.14) showed lower value. For XLOGP, Phthalic acid, butyl tetradecyl ester (7.97) showed higher value and4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester (1.57) showed lower value. For WLOGP, Phthalic acid, butyl tetradecyl ester (7.50) showed higher value and 2-Methoxy-4-vinylphenol (1.93) showed lower value. For MLOGP, Phthalic acid, butyl tetradecyl ester (5.65) showed higher value and 2-Methoxy-4-vinylphenol (1.71) showed lower value. For SILICOS-IT, Phthalic acid, butyl tetradecyl ester (8.17) showed higher value and Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester (-0.22) showed lower value.


 

Table 5: Lipophilicity of the phytochemicals of Avicennia marina leaves

No

Small Molecule

iLOGP

XLOGP3

WLOGP

MLOGP

Silicos-IT

Consensus Log Po/w

1

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

2.50

1.57

2.05

1.88

2.01

2.00

2

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

2.94

2.67

2.73

2.04

3.14

2.70

3

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

4.58

5.99

5.11

2.97

-0.22

3.69

4

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

2.85

4.22

3.90

3.21

3.65

3.57

5

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

3.48

3.67

4.10

3.69

3.85

3.76

6

17-Octadecynoic acid

3.98

7.21

5.64

4.57

5.96

5.47

7

Phthalic acid, butyl tetradecyl ester

4.87

7.97

7.50

5.65

8.17

6.83

8

Pentadecanoic acid,14-methyl-, methyl ester

4.59

7.20

5.50

4.44

5.67

5.48

9

9-Octadecenoic acid (Z)-, methyl ester

4.63

7.45

6.20

4.80

6.54

5.92

10

2-Methoxy-4-vinylphenol

2.14

2.81

1.93

1.71

2.13

2.14

 


In table 6, two topological approaches included in Swiss ADME to predict water solubility. First one is the application of the ESOL model. The water solubility data obtained for very soluble compound, e.g., 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester and soluble compound e.g., Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, 2-Methoxy-4-vinylphenol and Moderately soluble compound e.g., Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 17-Octadecynoic acid, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester and Poorly soluble compound e.g., Phthalic acid, butyl tetradecyl ester. Second one is Ali. The water solubility data obtained for soluble compound e.g., 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, 2-Methoxy-4-vinylphenol and moderately soluble compound e.g., 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one and poorly soluble compound e.g.,Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 17-Octadecynoic acid, Phthalic acid, butyl tetradecyl ester, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester. The third predictor of SwissADME was developed by SILICOS-IT. The water solubility data obtained for soluble compound e.g., 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, 2-Methoxy-4-vinylphenol and moderately soluble compound e.g., Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 17-Octadecynoic acid, Pentadecanoic acid,14-methyl-, methyl ester and poorly soluble compound e.g., Phthalic acid, butyl tetradecyl ester, 9-Octadecenoic acid (Z)-, methyl ester.

 


 

Table 6: Water solubility of the phytochemicals of Avicennia marina leaves

Small Molecule

ESOL

Ali

SILICOS-IT

Log S (ESOL)

Solubility

Class

Log S (ESOL)

Solubility

Class

Log S (ESOL)

Solubility

Class

mg/ml

mol/L

mg/ml

mol/L

mg/ml

mol/L

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

-1.67

4.23e+00

2.11e-02

Very soluble

-2.16

1.39e+00

6.96e-03

Soluble

-1.90

2.52e+00

1.26-02

Soluble

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

-2.46

7.79e-01

3.44e-03

Soluble

-3.23

1.23e-01

5.85e-04

Soluble

-3.19

1.46e-01

6.44e-04

Soluble

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

-5.64

8.44e-04

2.28e-06

Moderately soluble

-6.71

7.28e-05

1.96e-07

Poorly soluble

-5.31

1.82e-03

4.90e-06

Moderately soluble

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

-3.65

4.66e-02

2.26e-04

Soluble

-4.29

1.06e-02

5.14e-05

Moderately soluble

-3.04

1.89e-01

9.18e-04

Soluble

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

-3.51

7.80e-02

3.12e-04

Soluble

-3.91

3.07e-02

1.23e-04

Soluble

-3.80

3.95e-02

1.58e-04

Soluble

17-Octadecynoic acid

-5.13

2.07e-03

7.39e-06

Moderately soluble

-7.82

4.28e-06

1.53e-08

Poorly soluble

-5.41

1.10e-03

3.94e-06

Moderately soluble

Phthalic acid, butyl tetradecyl ester

-6.28

2.17e-04

5.19e-07

Poorly soluble

-8.93

4.96e-07

1.19e-09

Poorly soluble

-8.93

4.90e-07

1.17e-09

Poorly soluble

Pentadecanoic acid,14-methyl-, methyl ester

-5.13

2.01e-03

7.43e-06

Moderately soluble

-7.57

7.20e-06

2.66e-08

Poorly soluble

-5.64

6.24e-04

2.31e-06

Moderately soluble

9-Octadecenoic acid (Z)-, methyl ester

-5.32

1.43e-03

4.83e-06

Moderately soluble

-7.83

4.34e-06

1.46e-08

Poorly soluble

-6.09

2.40e-04

8.11e-07

Poorly soluble

2-Methoxy-4-vinylphenol

-2.81

2.31e-01

1.54e-03

Soluble

-3.09

1.23e-01

8.21e-04

Soluble

-2.38

6.30e-01

4.20e-03

Soluble

 

 


In table 7, for Pharmacokinetics predictions, the gastrointestinal (GI) absorption rate was obtained higher for all Phytochemicals except Phthalic acid, butyl tetradecyl ester. The blood-brain permeability is observed in all molecules except Phthalic acid, butyl tetradecyl ester and 9-Octadecenoic acid (Z)-, methyl ester. In case of skins permeation (logkp, cm/s), higher negative values are obtained for 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester (-6.41) followed by Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester (-5.78), Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester (-5.22), 2-Methoxy-4-vinylphenol (-5.22),  3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one (-4.56), Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester (-4.31), Phthalic acid, butyl tetradecyl ester (-3.19) and lower for 9-Octadecenoic acid (Z)-, methyl ester (-2.82)  followed by Pentadecanoic acid,14-methyl-, methyl ester (-2.84) and 17-Octadecynoic acid (-2.89). The all Phytochemicals did not showed p-glycoprotein substrate activity while Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester showed p-glycoprotein substrate activity. To detect inhibitory activity for cytochrome p450 as CYP1A2, Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 17-Octadecynoic acid, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester, 2-Methoxy-4-vinylphenol were showedinhibitors and 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, Phthalic acid, butyl tetradecyl ester showed non- inhibitors. for CYP2C19, all Phytochemicals were showed non-inhibitors except Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester; for CYP2C9, 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Phthalic acid, butyl tetradecyl ester, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester, 2-Methoxy-4-vinylphenol were showed non-inhibitors except Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester and 17-Octadecynoic acid; for CYP2D6, all Phytochemicals were showed non-inhibitors except Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester and for CYP3A4, all Phytochemicals were showed non-inhibitors except Phthalic acid, butyl tetradecyl ester.


 

Table 7: Pharmacokinetic Parameters of the Phytochemicals of Avicennia marina leaves

Small Molecule

GI absorption

BBB permeant

P-gp substrate

CYP1A2 inhibitor

CYP2C19 inhibitor

CYP2C9 inhibitor

CYP2D6 inhibitor

CYP3A4 inhibitor

Log Kp(cm/s)

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

High

Yes

No

No

No

No

No

No

-6.41

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

High

Yes

No

No

No

No

No

No

-5.78

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

High

Yes

Yes

Yes

No

Yes

Yes

No

-4.31

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

High

Yes

No

No

No

Yes

No

No

-4.56

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

High

Yes

No

No

Yes

Yes

No

No

-5.22

17-Octadecynoic acid

High

Yes

No

Yes

No

Yes

No

No

-2.89

Phthalic acid, butyl tetradecyl ester

Low

No

No

No

No

No

No

Yes

-3.19

Pentadecanoic acid,14-methyl-, methyl ester

High

Yes

No

Yes

No

No

No

No

-2.84

9-Octadecenoic acid (Z)-, methyl ester

High

No

No

Yes

No

No

No

No

-2.82

2-Methoxy-4-vinylphenol

High

Yes

No

Yes

No

No

No

No

-5.22

 


For drug-likeness prediction (Table 8),4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester and 2-Methoxy-4-vinylphenol were obtained suitable for Lipinski rule as 0 violation while 17-Octadecynoic acid, Phthalic acid, butyl tetradecyl ester, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester showed Lipinski rule as 1 violation. For Ghose filter, 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, Pentadecanoic acid,14-methyl-, methyl esterwere obtained suitable as 0 violation while  17-Octadecynoic acid, 9-Octadecenoic acid (Z)-, methyl ester, 2-Methoxy-4-vinylphenol showed violation as 1 and were Phthalic acid, butyl tetradecyl ester obtained violation as 2. For Veber, all phytochemicals were showed 0 violation except 17-Octadecynoic acid, Phthalic acid, butyl tetradecyl ester, Pentadecanoic acid,14-methyl-, methyl ester, 9-Octadecenoic acid (Z)-, methyl ester violation as 1. For Egan filter, 0 violation was observed for all phytochemical except Phthalic acid, butyl tetradecyl ester, 9-Octadecenoic acid (Z)-, methyl ester. For Muegge filter, 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester were obtained 0 violation while Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one, 17-Octadecynoic acid, Pentadecanoic acid,14-methyl-, methyl ester, 2-Methoxy-4-vinylphenol obtained 1 violation and Phthalic acid, butyl tetradecyl ester and 9-Octadecenoic acid (Z)-, methyl ester were obtained violation as 2. The same bioavailability scores were obtained for all studied small molecule (0.55) except 17-Octadecynoic acid (0.85).


 

Table 8: Drug likeness of the Phytochemicals of Avicennia marina leaves

Small Molecule

Lipinski

Ghose

Veber

Egan

Muegge

Bioavailability score

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

Yes; 0 violation

Yes

Yes

Yes

Yes

0.55

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

Yes; 0 violation

Yes

Yes

Yes

Yes

0.55

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

Yes; 0 violation

Yes

Yes

Yes

No; 1 violation: XLOGP3>5

0.55

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

Yes; 0 violation

Yes

Yes

Yes

No; 1 violation: Heteroatoms<2

0.55

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

Yes; 0 violation

Yes

Yes

Yes

Yes

0.55

17-Octadecynoic acid

Yes; 1 violation: MLOGP>4.15

No; 1 violation: WLOGP>5.6

No; 1 violation: Rotors>10

Yes

No; 1 violation: XLOGP3>5

0.85

Phthalic acid, butyl tetradecyl ester

Yes; 1 violation: MLOGP>4.15

No; 2 violations: WLOGP>5.6, #atoms>70

No; 1 violation: Rotors>10

No; 1 violation: WLOGP>5.88

No; 2 violations: XLOGP3>5, Rotors>15

0.55

Pentadecanoic acid,14-methyl-, methyl ester

Yes; 1 violation: MLOGP>4.15

Yes

No; 1 violation: Rotors>10

Yes

No; 1 violation: XLOGP3>5

0.55

9-Octadecenoic acid (Z)-, methyl ester

Yes; 1 violation: MLOGP>4.15

No; 1 violation: WLOGP>5.6

No; 1 violation: Rotors>10

No; 1 violation: WLOGP>5.88

No; 2 violations: XLOGP3>5, Rotors>15

0.55

2-Methoxy-4-vinylphenol

Yes; 0 violation

Yes; 1 violation: MW<160

Yes

Yes

Yes; 1 violation: MW<200

0.55

 

In case of medicinal chemistry friendliness prediction (Table 9), the PAINS obtained 0 violation for all phytochemicals. The Brenk structural alert as 0 violation for Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester, Pentadecanoic acid,14-methyl-, methyl ester and 2-Methoxy-4-vinylphenol while 1 violation for 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester, Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester, Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester, 17-Octadecynoic acid, Phthalic acid, butyl tetradecyl ester, 9-Octadecenoic acid (Z)-, methyl ester and 2 violation for 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one. The synthetic accessibility score showed in a following manner as Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester (3.91), Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester (3.75), Phthalic acid, butyl tetradecyl ester (3.65), 3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one (3.59), 17-Octadecynoic acid (3.35), 9-Octadecenoic acid (Z)-, methyl ester (3.16), Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester (2.91), 4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester (2.88) and 2-Methoxy-4-vinylphenol (1.45).


 

Table 9: Medicinal chemistry properties of the Phytochemicals of Avicennia marina leaves

SI. No.

Small Molecule

Pains

Brenk

Leadlikeness

Synthetic accessibility

1

4-Hydroxy-4-methylhex-5-enoic acid, Tert.-butyl ester

0 alert

1 alert: isolated_alkene

No; 1 violation: MW<250

2.88

2

Cyclopentaneacetic acid, 3-oxo-2-pentyl-, methyl ester

0 alert

0 alert

No; 1 violation: MW<250

2.91

3

Benzoic acid, 2,4-bis(trimethylsiloxy)-, Trimethylsilyl ester

0 alert

1 alert: heavy_metal

No; 2 violations: MW>350, XLOGP3>3.5

3.91

4

3-Methyl-4-(2,6,6-trimethyl-2-cyclohexen-1-yl)-3-buten-2-one

0 alert

2 alerts: isolated_alkene, Michael_acceptor_1

No; 2 violations: MW>250, XLOGP3>3.5

3.59

5

Acetic acid, (1,2,3,4,5,6,7,8-octahydro-3,8,8-trimeThylnaphth-2-yl)methyl ester

0 alert

1 alert: isolated_alkene

No; 1 violation: XLOGP3>3.5

3.75

6

17-Octadecynoic acid

0 alert

1 alert: triple_bond

No; 2 violations: Rotors>7, XLOGP3>3.5

3.35

7

Phthalic acid, butyl tetradecyl ester

0 alert

1 alert: more_than_2_esters

No; 3 violations: MW>350, Rotors>7, XLOGP3>3.5

3.65

8

Pentadecanoic acid,14-methyl-, methyl ester

0 alert

0 alert

No; 2 violations: Rotors>7, XLOGP3>3.5

2.53

9

9-Octadecenoic acid (Z)-, methyl ester

0 alert

1 alert: isolated_alkene

No; 2 violations: Rotors>7, XLOGP3>3.5

3.16

10

2-Methoxy-4-vinylphenol

0 alert

0 alert

No; 1 violation: MW<250

1.45

 



Figure 4: The BOILED-Egg represents for intuitive evaluation of passive gastrointestinal absorption (HIA) white part and brain penetration (BBB) yellow part as well as blue and red points PGP positive and negative in function of the position of the small molecules in the WLOGP-versus-TPSA graph

 


CONCLUSION:

Avicennia marina leaves are richer in phytoconstituents which can be used for medicinal purposes as an alternative natural drug with minimal adverse side effects. Further isolation and testing of phytoconstituents will bring promising results in the discovery and development of drugs especially antiviral and antibiotics.

 

CONFLICT OF INTEREST:

The authors have no conflicts of interest regarding this investigation.

 

ACKNOWLEDGEMENT:

The authors express sincere gratitude towards Management, Principal, Anekant Education Society’s Tuljaram Chaturchand College Baramati.  Head, and P.G. Coordinator Department of Chemistry and ARC T.C. College for facility and financial support. The authors are also grateful to coordinator, CFC for HPLC and FTIR analysis.

 

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Received on 14.06.2022         Modified on 29.06.2022

Accepted on 15.07.2022       ©A&V Publications All right reserved

Res. J. Pharmacognosy and Phytochem. 2022; 14(4):231-239.

DOI: 10.52711/0975-4385.2022.00041